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AlphaFold Models Available for a UniProt Accession (Coverage and Confidence Summary)

alphafold/uniprot-summary

Lists the AlphaFold structures that exist for one UniProt accession, including predicted complexes that contain it: for each, the model id and page, the model file URL, creation date, the UniProt range it covers and the coverage fraction, the confidence type with its average local score (pLDDT), the oligomeric state, and the chains and proteins it contains. Use it to check whether a model exists and which is best covered before fetching details. AlphaFold Protein Structure Database data, CC-BY-4.0, served by Eden Engine; not an official EMBL-EBI product.

activeper callv1

Price

$0.0026 per call

You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. No monthly minimum. Top-ups start at $5.

Data source

AlphaFold Protein Structure Database (EMBL-EBI)

AlphaFold DB data, CC-BY-4.0 (alphafold.ebi.ac.uk/download). Cite Fleming J. et al. AlphaFold Protein Structure Database and 3D-Beacons: New Data and Capabilities. J Mol Biol (2025) plus the structure's own publication. Served by Eden Engine; not an official EMBL-EBI product.

Use it

Five steps: search, inspect, learn, run, settle. No per-tool setup; your agent reaches this tool through the meta-tools it already has.

Connect once and your AI can find and run this tool, and any other it needs.

Install itCreate an account
agent
// 1. search: find the tool
omnial_search({ query: "what you need" })

// 2. inspect: price and input schema
omnial_inspect({ tool: "alphafold/uniprot-summary" })

// 3. learn: read the usage guide at runtime
omnial_learn({ tool: "alphafold/uniprot-summary" })

// 4. run: price the exact call first, then run it
omnial_execute({ tool: "alphafold/uniprot-summary", input: { /* see input_schema */ }, dry_run: true })
omnial_execute({ tool: "alphafold/uniprot-summary", input: { /* ... */ } })

// 5. settle: the call is charged when it finishes, nothing to do

Not connected yet? Point your MCP client at https://mcp.eden-engine.com/mcp, then copy a config for your client.

Pricing

Every charge this tool can incur.

ChargePrice
Per call
$0.0026
Updated
Oct 20, 2026

Input and output schemas

Input schema
input_schema.json
{
  "type": "object",
  "required": [
    "accession"
  ],
  "properties": {
    "accession": {
      "type": "string",
      "pattern": "^([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2})$",
      "description": "A UniProt accession in capitals, for example P05067 (amyloid-beta precursor protein, human). Isoform suffixes such as P05067-2 are not accepted."
    }
  },
  "additionalProperties": false
}
Output schema
output_schema.json
{
  "type": "object",
  "required": [
    "uniprot_entry",
    "structures"
  ],
  "properties": {
    "structures": {
      "type": "array",
      "items": {
        "type": "object",
        "properties": {
          "summary": {
            "type": "object",
            "description": "`model_identifier`, `model_category`, `model_url` (mmCIF file), `model_page_url`, `created`, `sequence_identity`, `uniprot_start`, `uniprot_end`, `coverage` (fraction of the UniProt sequence, 0 to 1), `confidence_type` (pLDDT), `confidence_avg_local_score` (0 to 100), `oligomeric_state` (MONOMER, HETERODIMER, ...) and `entities` (each chain's UniProt `identifier`, `description` and `chain_ids`). Fields the provider has no value for are null.",
            "additionalProperties": true
          }
        },
        "additionalProperties": true
      },
      "description": "One element per structure that includes this accession: the monomer and any predicted complexes."
    },
    "uniprot_entry": {
      "type": "object",
      "description": "The UniProt entry: `ac` (accession), `id` (entry name), `uniprot_checksum`, `sequence_length`, `segment_start` and `segment_end`.",
      "additionalProperties": true
    }
  },
  "description": "The provider's own summary document for the accession.",
  "additionalProperties": true
}