EBI Search Entry: One Record from a Life-Science Database by Accession

ebisearch/entry-lookup

Fetches one entry from uniprot, pdbe, chembl-molecule, reactome, hgnc, go, efo or europepmc by its accession or id, with the requested `fields`. Populated fields per domain: uniprot: acc, id, descRecName, gene_primary_name, organism_scientific_name, length, status, creation_date, last_modification_date. pdbe: acc, id, name, description, resolution, creation_date, last_modification_date. chembl-molecule: id, pref_name, molformula, molecular_weight, alogp, canonical_smiles, standard_inchi_key, polar_surface_area. reactome: id, stid, name, description, species, type. hgnc: id, gd_app_sym, gd_app_name, gd_aliases, gd_locus_type, gd_pub_chrom_map, gd_status. go: id, name, description, namespace, synonym. efo: id, name, description. europepmc: id, name, author, journal, publication_date, volume, pagination, source. An id the database does not hold answers 200 with an empty `entries` list. EMBL-EBI data, served by Eden Engine; not an official EMBL-EBI product.

activeper callv1

Price

$0.0026 per call

You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. No monthly minimum. Top-ups start at $0.50.

Data source

EMBL-EBI

Data from EBI Search, EMBL-EBI (ebi.ac.uk). EMBL-EBI places no additional restrictions on use or redistribution of its data beyond those set by the original data owners and expects attribution (ebi.ac.uk/about/terms-of-use). Served by Eden Engine; not an official EMBL-EBI product.

Use it

Five steps: search, inspect, learn, run, settle. No per-tool setup; your agent reaches this tool through the meta-tools it already has.

Connect once and your AI can find and run this tool, and any other it needs.

Install it Create an account

agent

// 1. search: find the tool
omnial_search({ query: "what you need" })

// 2. inspect: price and input schema
omnial_inspect({ tool: "ebisearch/entry-lookup" })

// 3. learn: read the usage guide at runtime
omnial_learn({ tool: "ebisearch/entry-lookup" })

// 4. run: price the exact call first, then run it
omnial_execute({ tool: "ebisearch/entry-lookup", input: { /* see input_schema */ }, dry_run: true })
omnial_execute({ tool: "ebisearch/entry-lookup", input: { /* ... */ } })

// 5. settle: the call is charged when it finishes, nothing to do

Not connected yet? Point your MCP client at https://mcp.eden-engine.com/mcp, then copy a config for your client.

Pricing

Every charge this tool can incur.

Charge	Price
Per call	$0.0026

Updated: Oct 25, 2026

Input and output schemas

Input schema

input_schema.json

{
  "type": "object",
  "required": [
    "domain",
    "id",
    "fields"
  ],
  "properties": {
    "id": {
      "type": "string",
      "pattern": "^[A-Za-z0-9_.:-]{1,64}$",
      "description": "Entry accession or id, for example P01308 (uniprot), 1cbs (pdbe), CHEMBL25 (chembl-molecule)."
    },
    "domain": {
      "enum": [
        "uniprot",
        "pdbe",
        "chembl-molecule",
        "reactome",
        "hgnc",
        "go",
        "efo",
        "europepmc"
      ],
      "type": "string",
      "description": "Database holding the entry."
    },
    "fields": {
      "type": "string",
      "pattern": "^(acc|alogp|author|canonical_smiles|creation_date|descRecName|description|gd_aliases|gd_app_name|gd_app_sym|gd_locus_type|gd_pub_chrom_map|gd_status|gene_primary_name|id|journal|last_modification_date|length|molecular_weight|molformula|name|namespace|organism_scientific_name|pagination|polar_surface_area|pref_name|publication_date|resolution|source|species|standard_inchi_key|status|stid|synonym|type|volume)(,(acc|alogp|author|canonical_smiles|creation_date|descRecName|description|gd_aliases|gd_app_name|gd_app_sym|gd_locus_type|gd_pub_chrom_map|gd_status|gene_primary_name|id|journal|last_modification_date|length|molecular_weight|molformula|name|namespace|organism_scientific_name|pagination|polar_surface_area|pref_name|publication_date|resolution|source|species|standard_inchi_key|status|stid|synonym|type|volume))*$",
      "maxLength": 300,
      "description": "Comma-separated fields to return, no spaces; must belong to the chosen domain. Per domain: uniprot: acc, id, descRecName, gene_primary_name, organism_scientific_name, length, status, creation_date, last_modification_date. pdbe: acc, id, name, description, resolution, creation_date, last_modification_date. chembl-molecule: id, pref_name, molformula, molecular_weight, alogp, canonical_smiles, standard_inchi_key, polar_surface_area. reactome: id, stid, name, description, species, type. hgnc: id, gd_app_sym, gd_app_name, gd_aliases, gd_locus_type, gd_pub_chrom_map, gd_status. go: id, name, description, namespace, synonym. efo: id, name, description. europepmc: id, name, author, journal, publication_date, volume, pagination, source."
    }
  },
  "additionalProperties": false
}

Output schema

output_schema.json

{
  "type": "object",
  "required": [
    "entries"
  ],
  "properties": {
    "entries": {
      "type": "array",
      "items": {
        "type": "object",
        "required": [
          "id"
        ],
        "properties": {
          "id": {
            "type": "string"
          },
          "acc": {
            "type": [
              "string",
              "null"
            ]
          },
          "fields": {
            "type": "object",
            "additionalProperties": {
              "type": "array",
              "items": {
                "type": "string"
              }
            }
          },
          "source": {
            "type": "string"
          }
        },
        "additionalProperties": true
      }
    }
  },
  "additionalProperties": true
}