PRIDE Project Lookup: One Proteomics Dataset by PXD Accession

pride/project-lookup

Returns one PRIDE project by PXD accession: title, description, sample and data processing protocols, keywords, DOI, licence, dates, instruments, organisms, diseases, experiment types and references. Submitter and lab head e-mail addresses are removed and long arrays are cut to their first 25 items. An unknown accession answers a provider error with a text body. EMBL-EBI PRIDE data, served by Eden Engine; not an official EMBL-EBI product.

activeper callv1

Price

$0.0026 per call

You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. No monthly minimum. Top-ups start at $0.50.

Data source

EMBL-EBI

Data from PRIDE, EMBL-EBI (ebi.ac.uk). EMBL-EBI places no additional restrictions on use or redistribution of its data beyond those set by the original data owners and expects attribution (ebi.ac.uk/about/terms-of-use). Served by Eden Engine; not an official EMBL-EBI product.

Use it

Five steps: search, inspect, learn, run, settle. No per-tool setup; your agent reaches this tool through the meta-tools it already has.

Connect once and your AI can find and run this tool, and any other it needs.

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agent

// 1. search: find the tool
omnial_search({ query: "what you need" })

// 2. inspect: price and input schema
omnial_inspect({ tool: "pride/project-lookup" })

// 3. learn: read the usage guide at runtime
omnial_learn({ tool: "pride/project-lookup" })

// 4. run: price the exact call first, then run it
omnial_execute({ tool: "pride/project-lookup", input: { /* see input_schema */ }, dry_run: true })
omnial_execute({ tool: "pride/project-lookup", input: { /* ... */ } })

// 5. settle: the call is charged when it finishes, nothing to do

Not connected yet? Point your MCP client at https://mcp.eden-engine.com/mcp, then copy a config for your client.

Pricing

Every charge this tool can incur.

Charge	Price
Per call	$0.0026

Updated: Oct 25, 2026

Input and output schemas

Input schema

input_schema.json

{
  "type": "object",
  "required": [
    "accession"
  ],
  "properties": {
    "accession": {
      "type": "string",
      "pattern": "^PXD[0-9]{6}$",
      "description": "ProteomeXchange accession, PXD followed by six digits, for example PXD000001."
    }
  },
  "additionalProperties": false
}

Output schema

output_schema.json

{
  "type": "object",
  "required": [
    "accession"
  ],
  "properties": {
    "doi": {
      "type": [
        "string",
        "null"
      ]
    },
    "title": {
      "type": [
        "string",
        "null"
      ]
    },
    "labPIs": {
      "type": [
        "array",
        "null"
      ],
      "items": {
        "type": "object",
        "additionalProperties": true
      }
    },
    "license": {
      "type": [
        "string",
        "null"
      ]
    },
    "diseases": {
      "type": [
        "array",
        "null"
      ]
    },
    "keywords": {
      "type": [
        "array",
        "null"
      ],
      "items": {
        "type": "string"
      }
    },
    "accession": {
      "type": "string"
    },
    "organisms": {
      "type": [
        "array",
        "null"
      ]
    },
    "references": {
      "type": [
        "array",
        "null"
      ]
    },
    "submitters": {
      "type": [
        "array",
        "null"
      ],
      "items": {
        "type": "object",
        "additionalProperties": true
      }
    },
    "instruments": {
      "type": [
        "array",
        "null"
      ]
    },
    "projectTags": {
      "type": [
        "array",
        "null"
      ],
      "items": {
        "type": "string"
      }
    },
    "updatedDate": {
      "type": [
        "string",
        "null"
      ]
    },
    "submissionDate": {
      "type": [
        "string",
        "null"
      ]
    },
    "submissionType": {
      "type": [
        "string",
        "null"
      ]
    },
    "experimentTypes": {
      "type": [
        "array",
        "null"
      ]
    },
    "publicationDate": {
      "type": [
        "string",
        "null"
      ]
    },
    "projectDescription": {
      "type": [
        "string",
        "null"
      ],
      "description": "null when none."
    },
    "dataProcessingProtocol": {
      "type": [
        "string",
        "null"
      ]
    },
    "sampleProcessingProtocol": {
      "type": [
        "string",
        "null"
      ]
    }
  },
  "additionalProperties": true
}