Reactome Pathway, Reaction or Entity Record by Stable ID

reactome/pathway-or-entity-record

Returns the full Reactome record for a stable id such as R-HSA-69620: the name, species, summary text, literature references, Gene Ontology annotation, figure references (paths only; no illustration is served), review status and, for a pathway, the events it contains. Look up a pathway, reaction or other database object when you already know its Reactome id; this tool does not search by name. Reactome data, passed through unmodified and served by Eden Engine; not an official Reactome product.

activeper callv1

Price

$0.0026 per call

You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. No monthly minimum. Top-ups start at $5.

Data source

Reactome

Data from Reactome (reactome.org), licensed CC0 per reactome.org/license; crediting Reactome is encouraged. Served by Eden Engine; not an official Reactome product.

Use it

Five steps: search, inspect, learn, run, settle. No per-tool setup; your agent reaches this tool through the meta-tools it already has.

Connect once and your AI can find and run this tool, and any other it needs.

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agent

// 1. search: find the tool
omnial_search({ query: "what you need" })

// 2. inspect: price and input schema
omnial_inspect({ tool: "reactome/pathway-or-entity-record" })

// 3. learn: read the usage guide at runtime
omnial_learn({ tool: "reactome/pathway-or-entity-record" })

// 4. run: price the exact call first, then run it
omnial_execute({ tool: "reactome/pathway-or-entity-record", input: { /* see input_schema */ }, dry_run: true })
omnial_execute({ tool: "reactome/pathway-or-entity-record", input: { /* ... */ } })

// 5. settle: the call is charged when it finishes, nothing to do

Not connected yet? Point your MCP client at https://mcp.eden-engine.com/mcp, then copy a config for your client.

Pricing

Every charge this tool can incur.

Charge	Price
Per call	$0.0026

Updated: Oct 20, 2026

Input and output schemas

Input schema

input_schema.json

{
  "type": "object",
  "required": [
    "id"
  ],
  "properties": {
    "id": {
      "type": "string",
      "pattern": "^[A-Za-z0-9][A-Za-z0-9._-]{0,39}$",
      "description": "A Reactome stable id, for example R-HSA-69620 (Cell Cycle Checkpoints, human). The R-HSA prefix is Homo sapiens; other species use their own prefix. A version suffix such as R-HSA-69620.5 is allowed."
    }
  },
  "additionalProperties": false
}

Output schema

output_schema.json

{
  "type": "object",
  "required": [
    "stId",
    "displayName"
  ],
  "properties": {
    "dbId": {
      "type": "integer",
      "description": "Reactome's internal database id."
    },
    "name": {
      "type": "array",
      "items": {
        "type": "string"
      },
      "description": "All names of the record."
    },
    "stId": {
      "type": "string",
      "description": "The stable id, for example R-HSA-69620."
    },
    "figure": {
      "type": "array",
      "items": {
        "type": "object",
        "additionalProperties": true
      },
      "description": "Figures; each `url` is a path relative to reactome.org."
    },
    "hasEvent": {
      "type": "array",
      "items": {
        "type": "object",
        "additionalProperties": true
      },
      "description": "For a pathway, the child pathways and reactions it contains."
    },
    "className": {
      "type": "string"
    },
    "summation": {
      "type": "array",
      "items": {
        "type": "object",
        "additionalProperties": true
      },
      "description": "Summary text; `text` contains HTML markup."
    },
    "isInferred": {
      "type": "boolean",
      "description": "True for a computationally inferred record."
    },
    "displayName": {
      "type": "string",
      "description": "The record's display name."
    },
    "isInDisease": {
      "type": "boolean"
    },
    "releaseDate": {
      "type": "string",
      "description": "Date the record was first released."
    },
    "schemaClass": {
      "type": "string",
      "description": "The record type, for example Pathway."
    },
    "speciesName": {
      "type": "string",
      "description": "Species of the record, for example Homo sapiens."
    },
    "stIdVersion": {
      "type": "string",
      "description": "The stable id with its version."
    },
    "reviewStatus": {
      "type": "object",
      "additionalProperties": true
    },
    "lastUpdatedDate": {
      "type": "string",
      "description": "Date the record was last updated."
    },
    "goBiologicalProcess": {
      "type": "object",
      "description": "The Gene Ontology biological process term, with accession and definition.",
      "additionalProperties": true
    },
    "literatureReference": {
      "type": "array",
      "items": {
        "type": "object",
        "additionalProperties": true
      },
      "description": "Publications cited for the record."
    }
  },
  "description": "The Reactome database record. A pathway also carries `hasEvent` (its child events); every record carries `schemaClass` and `className`.",
  "additionalProperties": true
}