WikiPathways Biological Pathways Grouped by Organism, With IDs and Revision Dates

wikipathways/list-pathways

Every pathway in WikiPathways grouped by organism: for each of the 41 organisms its Latin name, common name and two-letter code, and for each pathway its WikiPathways id (WP...), name, species, page URL and date of the latest revision. About 2,200 pathways, about 650 KB, of which Homo sapiens has about 1,100. Take an id to the pathway's page. Data from WikiPathways (CC0); cached for 10 minutes. Passed through unmodified and served by Eden Engine; not an official product.

activeper callv1

Price

$0.0026 per call

You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. No monthly minimum. Top-ups start at $5.

Data source

WikiPathways

Data from WikiPathways (wikipathways.org), released under a CC0 waiver; citing WikiPathways is courteous. Served by Eden Engine; not an official WikiPathways product.

Use it

Five steps: search, inspect, learn, run, settle. No per-tool setup; your agent reaches this tool through the meta-tools it already has.

Connect once and your AI can find and run this tool, and any other it needs.

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agent

// 1. search: find the tool
omnial_search({ query: "what you need" })

// 2. inspect: price and input schema
omnial_inspect({ tool: "wikipathways/list-pathways" })

// 3. learn: read the usage guide at runtime
omnial_learn({ tool: "wikipathways/list-pathways" })

// 4. run: price the exact call first, then run it
omnial_execute({ tool: "wikipathways/list-pathways", input: { /* see input_schema */ }, dry_run: true })
omnial_execute({ tool: "wikipathways/list-pathways", input: { /* ... */ } })

// 5. settle: the call is charged when it finishes, nothing to do

Not connected yet? Point your MCP client at https://mcp.eden-engine.com/mcp, then copy a config for your client.

Pricing

Every charge this tool can incur.

Charge	Price
Per call	$0.0026

Updated: Oct 21, 2026

Input and output schemas

Input schema

input_schema.json

{
  "type": "object",
  "properties": {},
  "additionalProperties": false
}

Output schema

output_schema.json

{
  "type": "object",
  "required": [
    "organisms"
  ],
  "properties": {
    "organisms": {
      "type": "array",
      "items": {
        "type": "object",
        "properties": {
          "latin": {
            "type": "string",
            "description": "Latin name with an underscore, for example Homo_sapiens."
          },
          "common": {
            "type": "string"
          },
          "pathways": {
            "type": "array",
            "items": {
              "type": "object",
              "properties": {
                "id": {
                  "type": "string",
                  "description": "The WikiPathways id, for example WP5352."
                },
                "url": {
                  "type": "string"
                },
                "name": {
                  "type": "string"
                },
                "species": {
                  "type": "string"
                },
                "revision": {
                  "type": "string",
                  "description": "Date of the latest revision, YYYY-MM-DD."
                }
              },
              "additionalProperties": true
            }
          },
          "two-letter-code": {
            "type": "string"
          }
        },
        "additionalProperties": true
      },
      "description": "One entry per organism with its pathways."
    }
  },
  "additionalProperties": true
}