Catalog
Tool catalog
Connect once and your AI can find and run any tool it needs. Below is what it can reach today: tools your agent pays for by the call.
Catalog results
67 tools in Bioinformatics.
PDB Entry Publications: Papers, DOIs and PubMed IDs Behind a Protein Structure (PDBe)
Publications associated with one Protein Data Bank entry by its four-character PDB id: title, DOI, PubMed id, journal, volume, pages, year,…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
PDB Entry Summary: Title, Method, Dates and Authors of a Protein Structure (PDBe)
Summary of one Protein Data Bank entry by its four-character PDB id: title, deposition, release and revision dates, experimental method,…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
PDB to UniProt Mapping: Chains, Residue Ranges and Coverage via SIFTS (PDBe)
Maps the chains of one Protein Data Bank entry (four-character PDB id) onto UniProt accessions using SIFTS: for each accession its…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
PRIDE Project Lookup: One Proteomics Dataset by PXD Accession
Returns one PRIDE project by PXD accession: title, description, sample and data processing protocols, keywords, DOI, licence, dates,…
$0.0026 per call
EMBL-EBI · Bioinformatics
PRIDE Project Search: Proteomics Datasets by Keyword
Searches PRIDE projects by keyword, up to 20 per page, with the same record fields as the list tool. Submitter and lab head e-mail…
$0.0026 per call
EMBL-EBI · Bioinformatics
PRIDE Projects: Browse Proteomics Datasets
Lists projects of the PRIDE proteomics archive, up to 20 per page: accession (PXD...), title, description, protocols, keywords, DOI, dates,…
$0.0026 per call
EMBL-EBI · Bioinformatics
Protein Interaction Partners and Their PDB Complexes (PDBe-KB)
For one UniProt accession, the interaction partners PDBe-KB derives from PDB complexes: for each partner its name, the PDB entries and…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
Protein Structure Counts: PDB Structures, Ligands, Interaction Partners (PDBe-KB)
For one UniProt accession, the number of PDB structures, ligands, interaction partners, annotations and similar proteins PDBe-KB holds. A…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
Reference Sequence Metadata by MD5 Checksum: Length and Identifiers (GA4GH refget, ENA)
Returns the GA4GH refget record for one reference sequence held in the European Nucleotide Archive's CRAM reference registry, looked up by…
$0.0026 per call
European Nucleotide Archive (EMBL-EBI) · Bioinformatics
Reference Sequence Window: Bases by MD5 Checksum, Start and End (GA4GH refget, ENA)
Returns the bases of a window of one reference sequence held in the European Nucleotide Archive's CRAM reference registry, selected by the…
$0.0026 per call
European Nucleotide Archive (EMBL-EBI) · Bioinformatics
Structurally Superposed Clusters of PDB Chains for a Protein (PDBe-KB)
For one UniProt accession, the segments of the protein that PDBe-KB has superposed and, per segment, the clusters of PDB chains that share…
$0.0026 per call
Protein Data Bank in Europe (PDBe), EMBL-EBI · Bioinformatics
UniChem Compound Cross-References by InChIKey
Looks up a compound by standard InChIKey (27 characters, for example BSYNRYMUTXBXSQ-UHFFFAOYSA-N for aspirin) in UniChem and returns where…
$0.0026 per call
UniChem (EMBL-EBI) · Bioinformatics
UniChem Source Databases
The catalogue of source databases UniChem cross-references (about 25, among them ChEMBL, DrugBank, PubChem, ChEBI, RCSB PDB, HMDB,…
$0.0026 per call
UniChem (EMBL-EBI) · Bioinformatics
UniProt Accession to ChEMBL Target Ids (CROssBAR)
The ChEMBL target ids that contain a UniProt accession (for example P04637, human p53, answers CHEMBL4096 plus complexes and protein…
$0.0026 per call
EMBL-EBI · Bioinformatics
UniProt Protein Entry Lookup
UniProtKB entry for one accession (for example P04637, P01308, P02144) from the EMBL-EBI Proteins API: entry type (reviewed or not), names,…
$0.0026 per call
UniProt Consortium · Bioinformatics
UniProt Protein Features by Category
Sequence features of one UniProtKB accession (for example P04637, P02144) in one category from the EMBL-EBI Proteins API:…
$0.0026 per call
UniProt Consortium · Bioinformatics
UniProt Protein Search by Gene
Finds reviewed (Swiss-Prot) UniProtKB entries for an exact gene name (for example TP53, INS, KRAS), case-insensitive, optionally restricted…
$0.0026 per call
UniProt Consortium · Bioinformatics
WikiPathways Pathway Search by Title Keyword
Searches WikiPathways pathway titles for a keyword (case-insensitive substring) within one organism and returns one row per pathway with…
$0.0026 per call
WikiPathways · Bioinformatics
WikiPathways Pathways Containing a Gene Symbol
Lists the WikiPathways pathways of one organism that contain a data node labelled with an exact gene symbol (case sensitive, for example…
$0.0026 per call
WikiPathways · Bioinformatics
Every tool has an explicit pricing model and a usage guide written for it and checked against its schema.
You pay the price shown. If a call turns out to cost more than its quote, you pay the actual price, capped at twice the quote. Run omnial_execute with dry_run: true for an exact quote.
Search here runs the same omnial_search call your agent makes over MCP: ranked matches, each showing the keyword or field it matched on. It always answers with what it found; an empty result means the catalog carries none of those terms, and the full list is right below.